Multiple sclerosis • MRI • neuroimaging

Radiological Biomarkers in Multiple Sclerosis: Modern MRI Capabilities

Magnetic resonance imaging remains the main neuroimaging method in multiple sclerosis. Modern MRI, however, can assess not only the number of lesions but also their structure, location, evolution over time, relationship to small veins, signs of chronic inflammation, and gradual tissue loss in the brain and spinal cord.

Some radiological biomarkers are already used routinely, others acquired a new role in the 2024 McDonald criteria, while some measures are still used mainly in research and specialized centers.

A more complex MRI protocol does not always mean better monitoring. For most patients, standardized acquisition, high image quality, and correct comparison with previous studies are especially important.
Clinical questions

What questions should MRI answer in multiple sclerosis?

1

Is the imaging pattern compatible with MS?

Lesion location, shape and distribution are assessed and, when needed, more specific features such as the central vein sign or a paramagnetic rim.

2

Is there new inflammatory activity?

The scan is assessed for new or enlarging T2/FLAIR lesions and, when indicated, gadolinium-enhancing lesions.

3

Has structural damage accumulated?

Persistent T1-hypointense lesions, cortical involvement, atrophy and spinal cord changes are considered.

4

Are there signs of chronic activity?

Paramagnetic rim lesions, slowly expanding lesions and quantitative atrophy measures may provide additional information.

A radiological biomarker is not a ready-made clinical decision. MRI findings must be interpreted together with symptoms, neurological examination, disease phenotype, previous scans and current treatment.
Map of radiological biomarkers

What is used today and what is still mainly promising?

BiomarkerWhat it reflectsDiagnosisActivityProgressionUse
New or enlarging T2/FLAIR lesionsNew focal inflammatory activityYesYesLimitedRoutine
Gadolinium-enhancing lesionsRecent blood–brain barrier disruptionYesYesNot directlyWhen clinically indicated
Central vein sign (CVS)Characteristic perivenular lesion architectureYesNoNot establishedSpecialized MRI
Paramagnetic rim lesions (PRL)Chronic inflammation at the lesion edgeYes, in selected situationsChronic activityHas prognostic valueSpecialized MRI
Cortical lesionsCerebral cortical involvementAdditional informationLimitedHas prognostic valueDetection depends on protocol
Slowly expanding lesions (SEL)Gradual enlargement of a subset of chronic lesionsNoChronic activityPromising markerMainly research
Persistent T1-hypointense lesions (T1 black holes)More severe irreversible tissue injuryLimitedNot a primary markerAssociated with severity of tissue damageVisible on standard MRI
Brain atrophyAccumulated loss of nervous tissueNoNot directlyYes, at group levelQuantitative clinical use remains limited
Spinal cord atrophyStructural spinal cord injuryNoNot directlyImportant prognostic valueNot yet a routine quantitative measure
Leptomeningeal enhancement (LME)Possible meningeal inflammationNoUnder studyUnder studyResearch measure
Standard MRI

New lesions remain one of the most important measures of disease activity

The development of advanced neuroimaging has not reduced the importance of conventional standardized MRI. New or enlarging lesions are still among the findings that most directly influence assessment of treatment effectiveness.

Routine

New T2/FLAIR lesions

A new lesion or definite enlargement of a pre-existing lesion indicates new inflammatory activity when studies were performed with comparable protocols.

When indicated

Gadolinium-enhancing lesions

Contrast enhancement reflects temporary blood–brain barrier disruption and identifies recent inflammatory activity.

The absence of enhancement does not mean that no new activity occurred during the previous months.

Standard MRI

Persistent T1-hypointense lesions (T1 black holes)

Persistent low signal on T1-weighted images may reflect more severe loss of myelin and axons and structural tissue destruction.

These lesions are not used as a stand-alone criterion for switching treatment.

Lesion count is only one characteristic of MS. Lesion location, spinal cord and cortical involvement, chronic activity of older lesions and the degree of diffuse tissue injury also matter.
New diagnostic feature

Central vein sign (CVS)

Many MS lesions develop around small veins. When an MRI sequence is sufficiently sensitive to magnetic susceptibility, a vein running through the lesion can be visualized.

Why it matters

Perivenular architecture is characteristic of many MS lesions and can help distinguish them from some nonspecific white-matter abnormalities seen in migraine, vascular risk factors and other conditions.

How the central vein is detected

Susceptibility-sensitive sequences are used, including susceptibility-weighted imaging (SWI).

For most clinical tasks, a good-quality 3-Tesla scanner is sufficient. A 7-Tesla MRI is not required for routine diagnosis.

The central vein sign does not need to be sought in every patient with already well-established MS. Its main value is to increase diagnostic confidence when conventional MRI cannot reliably distinguish MS from other causes of white-matter lesions.
Chronic lesion activity

Paramagnetic rim lesions (PRL)

After the acute inflammatory phase has resolved, some MS lesions do not become completely inactive. Activated microglia and macrophages containing iron may persist at the lesion edge.

On susceptibility-sensitive MRI, this may appear as a characteristic dark rim around the lesion.

Diagnostic value

Paramagnetic rim lesions are much more common in MS than in most disorders that can mimic it on MRI.

This is why PRL acquired a diagnostic role in the revised 2024 McDonald criteria.

Biological meaning

A paramagnetic rim is associated with persistent inflammation at the periphery of a chronic lesion after acute blood–brain barrier disruption has subsided.

Prognostic value

In research studies, PRL are associated with more severe tissue injury and less favorable disease characteristics.

However, there is no universal number of PRL that automatically requires a treatment change.

High specificity does not mean high sensitivity: many people with confirmed multiple sclerosis have no paramagnetic rim lesions.
Gray-matter involvement

Cortical lesions

Multiple sclerosis affects more than white matter. Lesions within the cerebral cortex are an important part of the disease and may occur even at early stages.

Why they matter

Cortical involvement is associated with cognitive impairment, gray-matter atrophy and disability accumulation.

Cortical lesions may also provide additional diagnostic information.

Why they are difficult to see

Their small size and low contrast with normal cortex make many cortical lesions difficult to detect on conventional MRI.

Double inversion recovery (DIR) and phase-sensitive inversion recovery (PSIR) may improve detection.

7-Tesla MRI detects more cortical lesions, but it is not currently required for diagnosis or routine monitoring in most patients with MS.
Spinal cord

Spinal cord lesions and atrophy

Spinal cord involvement has particularly high clinical relevance: even a relatively small lesion can cause substantial motor, sensory or bladder and bowel dysfunction.

Spinal cord lesions

Typical MS lesions are usually relatively short and do not occupy the entire cross-sectional area of the cord.

Their shape and length also help in differential diagnosis from NMOSD, MOGAD, vascular and compressive lesions.

New spinal lesions

New lesions may indicate ongoing disease activity and can be highly relevant when assessing treatment effectiveness.

Spinal cord atrophy

Reduction in spinal cord area or volume is associated with gait impairment, motor disability and progression.

Quantitative assessment remains technically more difficult than conventional lesion detection.

When gait or pyramidal signs worsen, a stable brain MRI does not exclude clinically important spinal cord disease.
Optic nerve

Optic nerve MRI

In the 2024 McDonald criteria, the optic nerve became a fifth anatomical location that may contribute to demonstrating dissemination of a demyelinating process in space.

When it is especially useful

When optic neuritis is suspected, dedicated sequences can demonstrate characteristic optic nerve involvement.

When it is not required

Dedicated optic nerve imaging does not need to be added to every routine follow-up MRI in a patient with already established MS.

The need depends on the clinical question.

Chronic active injury

Chronic active lesions (CAL)

One of the major goals of modern neuroimaging is to visualize processes that continue after acute contrast enhancement has disappeared.

In a chronic active lesion, the center may already contain substantially damaged tissue, while slow inflammation involving microglia and macrophages persists at the edge.

Paramagnetic rim lesion (PRL)

Defined by susceptibility-related MRI features and associated with iron-containing cells at the edge of a chronic lesion.

Slowly expanding lesion (SEL)

Defined by gradual enlargement of a pre-existing lesion on quantitative analysis of several serial MRI scans.

PRL and SEL are not two names for the same phenomenon. These features overlap only partially and characterize different aspects of chronic tissue injury. Neither is a perfect MRI equivalent of a pathologically defined chronic active lesion.
Evolution of chronic lesions

Slowly expanding lesions (SEL)

Some older T2 lesions may expand very slowly over several years without gadolinium enhancement and without appearing active on routine visual comparison.

How they are detected

Not simply by viewing two scans side by side, but by computational registration of multiple studies and analysis of changes in lesion borders over time.

What they may reflect

In several studies, SEL are associated with more severe microstructural injury, axonal loss and less favorable longitudinal changes.

Why they are not routinely reported

Different algorithms and thresholds are used to define SEL. Standardization is not yet sufficient for routine individual monitoring.

SEL are an interesting biomarker of chronic activity, but today they remain primarily a research tool and a specialized quantitative imaging measure.
Loss of nervous tissue

Brain and spinal cord atrophy

In multiple sclerosis, the volume of some central nervous system structures may decline faster than with normal aging. Atrophy is associated with accumulation of irreversible tissue injury and long-term disability.

Whole-brain volume

An important outcome in clinical trials and associated with long-term prognosis.

Gray matter and thalamus

Atrophy of gray matter and deep gray structures may be associated with motor and cognitive impairment.

Spinal cord

Cervical spinal cord atrophy is particularly closely associated with gait impairment and motor disability.

Why a small volume change can be difficult to interpret

Different scanners

Changing the scanner, coil, reconstruction software or acquisition protocol can affect quantitative results.

Physiological variability

Age, hydration and other biological factors can influence volume measurements.

Pseudoatrophy

After starting effective anti-inflammatory treatment, brain volume may temporarily decrease because inflammatory edema resolves rather than because neurodegeneration accelerates.

A small decrease in brain volume should not be used as the sole reason to switch DMT. Individual interpretation requires comparable scans, a standardized protocol and validated analysis software.
PIRA and progressive disease

Why conventional lesion count poorly reflects gradual progression

New T2/FLAIR lesions and gadolinium enhancement are good markers of focal inflammatory activity. They are much less informative about processes that cause gradual disability accumulation without relapses.

This is why other measures are being studied in progression independent of relapse activity (PIRA).

Paramagnetic rim lesions

May reflect persistent chronic inflammation in old lesions.

Slowly expanding lesions

Characterize long-term evolution of a subset of chronic lesions.

Atrophy

Reflects accumulated tissue loss in the brain and spinal cord.

Cortical involvement

Cortical lesions and gray-matter atrophy are associated with chronic injury and disability.

Deep gray matter

Thalamic and other deep gray-matter atrophy are of particular interest, but individual interpretation remains limited.

Spinal cord

Spinal cord atrophy may be especially closely linked to motor deterioration.

There is currently no single MRI measure that can determine PIRA or transition to secondary progressive MS from one scan. Progression is defined primarily by clinical change, while MRI helps clarify possible biological mechanisms.
Quantitative and specialized MRI

What lies beyond the standard protocol?

Modern neuroimaging can assess not only lesion shape and volume, but also tissue microstructure, iron, myelin and diffuse injury outside visible lesions.

Mainly research

Quantitative susceptibility mapping (QSM)

Provides quantitative assessment of tissue magnetic susceptibility and is used to study iron and chronic active lesions.

Mainly research

Diffusion tensor imaging (DTI)

Assesses water diffusion properties and can detect microstructural white-matter abnormalities, including in regions that appear normal on conventional MRI.

Mainly research

Magnetization transfer imaging (MTI)

Used for indirect assessment of tissue macromolecular changes and myelin integrity.

Mainly research

Myelin water imaging (MWI)

Being developed as a more specific way to estimate myelin content and study demyelination and remyelination.

Developing method

Automated lesion segmentation

Can automatically identify lesion number and volume and compare them across serial scans.

Developing method

Artificial intelligence (AI)

May help detect new lesions, assess atrophy and automate parts of quantitative analysis.

AI does not replace clinical interpretation by a neurologist and neuroradiologist.

Other research directions

Which additional MRI features are being studied?

Leptomeningeal enhancement (LME)

May reflect inflammatory processes in the meninges and is discussed as a possible marker of compartmentalized inflammation.

The method is not standardized enough for routine monitoring.

Normal-appearing white matter

Quantitative techniques show that MS-related tissue injury may extend far beyond visible T2 lesions.

Ultra-high-field MRI

7-Tesla MRI can show some cortical lesions, central veins and fine structure of chronic lesions more clearly.

It remains a specialized tool rather than a required component of routine MS monitoring.

Practical question

Which MRI does a patient with multiple sclerosis actually need?

For clinical practice, the goal is not the maximum number of advanced sequences, but a high-quality reproducible protocol that allows reliable comparison over time.

At the time of initial diagnosis

  • Brain MRI using a standardized MS protocol;
  • spinal cord assessment when indicated by the clinical and diagnostic question;
  • a high-quality three-dimensional T2-FLAIR sequence;
  • gadolinium when needed to answer a specific diagnostic question;
  • susceptibility-sensitive sequences when assessment of central veins or paramagnetic rim lesions is relevant;
  • dedicated optic nerve MRI when optic neuritis is suspected or in a difficult diagnostic situation.

For routine follow-up

  • use the same or the most comparable protocol whenever possible;
  • preferably use the same scanner or a technically comparable system;
  • have access to previous images, not only the written reports;
  • the main goal is to detect new or enlarging lesions;
  • gadolinium is not automatically required at every routine follow-up scan.
Patients do not need to search on their own for an MRI “with PRL, SEL, QSM and DTI.” These techniques are useful when they answer a specific clinical or diagnostic question.
MRI report

What is especially important in an MS MRI report?

1

Which previous study was used for comparison?

It should be clear which prior MRI was used to compare the new images.

2

Are there new lesions?

The report should state whether new or enlarging T2/FLAIR lesions are present.

3

Is there contrast activity?

If gadolinium was given, the report should state whether enhancing lesions are present.

4

Where are the lesions located?

Periventricular, cortical or juxtacortical, infratentorial and spinal locations are relevant.

5

Are there atypical features?

If lesion morphology or distribution is not typical for MS, this is important for further differential diagnosis.

6

Are additional specific features present?

When appropriate sequences are available, the central vein sign and paramagnetic rim lesions can be assessed.

For expert review, the original images are often more important than the written report. For a second opinion, it is preferable to provide the study itself in DICOM format, not only the report.
Treatment monitoring

Which MRI findings actually influence assessment of DMT effectiveness?

New T2/FLAIR lesions

One of the main objective signs of persistent focal inflammatory activity during treatment.

Gadolinium enhancement

Indicates recent inflammation and must be interpreted in relation to the timing of treatment initiation or switching.

New spinal cord lesions

May have particularly high clinical relevance because of the functional importance of spinal pathways.

What about PRL, SEL and atrophy?

These measures provide important information about chronic tissue injury and are gradually expanding our understanding of MS progression.

However, there is not yet a simple widely accepted algorithm that allows treatment to be changed automatically on the basis of one of these findings.

“A paramagnetic rim lesion was found, so the drug must be changed” or “brain volume decreased, so treatment is not working” are overly simplified conclusions.
When advanced MRI features may be especially useful

Clinical situations in which additional radiological biomarkers can help

MRI resembles MS, but the diagnosis is uncertain

The central vein sign, paramagnetic rim lesions and cortical lesions may increase diagnostic specificity.

This can be especially useful when migraine, vascular risk factors or multiple nonspecific white-matter lesions are present.

An older patient

Vascular and other nonspecific white-matter abnormalities become more common with age, which can make conventional MRI more difficult to interpret.

Clinical function worsens while conventional MRI is stable

When PIRA is suspected, it is particularly important to assess the spinal cord, functional evolution and possible signs of chronic tissue injury.

An old diagnosis needs to be reconsidered

Expert re-evaluation of the original images using modern diagnostic criteria may sometimes provide more information than simply repeating another standard MRI.

Frequently asked questions

Radiological biomarkers in multiple sclerosis

Should the central vein sign be sought in every patient with MS?
No. When a typical MS diagnosis is already well established, looking for CVS is usually unnecessary. The sign is most useful when there is diagnostic uncertainty and MS must be distinguished from other causes of white-matter lesions.
If a paramagnetic rim lesion is found, does that prove MS?
No. PRL have high specificity, but MS is never diagnosed from a single MRI feature. The clinical picture, the rest of the MRI pattern and alternative diagnoses must all be considered.
Does the absence of PRL mean a milder disease course?
No. PRL are associated with less favorable outcomes at the group level, but their absence does not guarantee a mild course and does not exclude progression through other mechanisms.
Are PRL and SEL the same thing?
No. A paramagnetic rim lesion is defined by magnetic susceptibility characteristics and is associated with iron-containing cells around the lesion edge. A slowly expanding lesion is defined by gradual enlargement of a pre-existing lesion on quantitative analysis of serial MRI scans.
Is gadolinium needed at every MRI?
No. With high-quality standardized follow-up, new T2/FLAIR lesions can often be detected without contrast. Gadolinium is particularly useful during initial diagnosis, unexpected clinical worsening and other situations in which recent inflammatory activity needs to be clarified.
Should I have 7-Tesla MRI instead of 3-Tesla MRI?
For most clinical purposes, a high-quality 3-Tesla MRI is sufficient. A 7-Tesla system shows some cortical lesions, central veins and chronic lesion structure more clearly, but remains mainly a specialized and research technology.
Can brain atrophy show that my treatment is not working?
Not from a single measurement. Atrophy is associated with progression, but quantitative results depend on scanner, protocol, software, age, physiological factors and pseudoatrophy. A change in brain volume should therefore not be the sole reason to switch treatment.
If MRI shows no new lesions, does that mean MS is not progressing?
No. Disability may accumulate gradually without relapses and without new conventional T2 lesions. This is why atrophy, PRL, SEL, cortical involvement and quantitative spinal cord measures are being studied.
Why is it preferable to perform follow-up MRI using the same protocol?
Differences in scanner, slice thickness, orientation, sequences and acquisition parameters can make comparison difficult and may even create a false impression that lesions have appeared or disappeared. Standardized protocols make longitudinal monitoring much more reliable.
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Author

Dr. Lidiia Prakhova

Neurologist, Doctor of Medical Sciences. Main areas of work include multiple sclerosis and other neuroimmunological disorders, modern diagnostics, neuroimaging, biomarkers, and treatment selection and switching.

This material is intended for educational purposes and does not replace an individual medical consultation. MRI findings should be interpreted in the context of the clinical picture, neurological examination and longitudinal disease course.

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Key references

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